Package index • NEesp2

NEesp2 Functions

Functions to create Northeast ESPS

Create indicators

create_mrip_trips(): Get MRIP trips file list Create MRIP total recreational trips indicator

create_prop_sp_trips(): Create MRIP species recreational effort indicator

create_spatial_indicator(): Create Spatial Indicator

create_stratified_mean(): Calculate Stratified Mean Biomass

create_swept_area(): Calculate Swept Area Biomass

create_template(): Create an ESP template

create_total_mrip(): Create MRIP total recreational catch indicator

species.codes: Species codes for bottom trawl survey

species_condition(): Create species condition indicator

species_condition_old(): Create species condition indicator

species_data: DATASET_TITLE

species_range(): Calculate Species Range

Data visualization

Plot indicators

plot_condition(): Plot Condition

plot_risk(): Plot Risk Assessment summary

plt_indicator(): Plot indicator time series

Create tables

rpt_card_table(): Create a flextable with inset indicator time series plots

Other functions

add_fig_paths(): Simple function to add image file paths to indicator table template within targets pipeline

esp_csv_to_nc(): Convert longform tidy ESP indicator data to netcdf

find_files(): Locate files containing a text string

format_from_template(): Wrapper function to format data for upload to AKFIN web service

format_indicator(): Format data for upload to AKFIN web service

format_tbl_data(): Format data from report card spreadsheet

get_mrip_catch(): Scrape MRIP catch data from MRIP Query tool

get_mrip_trips(): Scrape MRIP trip data from MRIP Query tool

groupby_state(): Utility function to group by

hms_key: Highly Migratory Species (HMS) Names and Species Codes

LWparams: #' @title Length-weight parameters from Wigley et al. (2003)

nc_to_raster(): Convert netcdf to raster

save_catch(): Scrape and save MRIP catch data from MRIP Query tool

save_trips(): Scrape and save MRIP trip data from MRIP Query tool

strata_epu_key: Strata EPU Key

survdat_subset: Survdat data pull