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Species distribution on the NES.

Source: R/species_dist.R
create_species_dist.Rd

Data include time series of depth, distance from shelf and distance along shelf.

Usage

create_species_dist(
  inputPathSurvey,
  inputPathSpecies,
  static_depth,
  static_diagonal,
  static_coast_coord,
  static_strat_areas
)

Arguments

inputPathSurvey

Character string. Full path to the survdat data pull rds file

inputPathSpecies

Character string. Full path to the species list data pull rds file

static_depth

Character string. Path to file with depth data for NE shelf

static_diagonal

Character string. Path to file with along shelf diagonal data

static_coast_coord

Character string. Path to file with lat lon coordinates defining the coastline

static_strat_areas

Character string. Path to file defining NEFSC trawl survey strata

Value

ecodata::species_dist data frame

Examples

if (FALSE) { # \dontrun{
# create the ecodata::species_dist indicator
create_species_dist(inputPathSurvey = here::here("surveyNoLengths.rds"),
 inputPathSpecies = "/home/<user>/EDAB_Datasets/SOE_species_list_24.rds",
 static_depth =  "/home/<user>/EDAB_Resources/workflow_resources/soe_workflows/nes_bath_data.nc",
 static_diagonal = "/home/<user>/EDAB_Resources/workflow_resources/soe_workflows/diag.csv",
 static_coast_coord = "/home/<user>/EDAB_Resources/workflow_resources/soe_workflows/nes_coast_2.csv",
 static_strat_areas = "/home/<user>/EDAB_Resources/workflow_resources/soe_workflows/stratareas.rds")

} # }