Render Species Distribution Model (SDM) reports — make_sdm

Builds SDM report using a provided template. Requires directory to be set up per directions in the package documentation/manual.

Usage

make_sdm_reports(
  species_list,
  yr_min,
  yr_max,
  model_metrics,
  feeding_key,
  habitat_key,
  variable_key,
  template,
  report_path
)

species_list: a data.table containing the species names. Must contain the column Common.name
yr_min, yr_max: start and end of timeseries to plot, used to pick correct model predictions to include
model_metrics: a data.table containing the model metrics for each species. Generated by model_metrics.
feeding_key, habitat_key: file path to csv for feeding and habitat guild keys respectively. Used for matching variable names. See vignette for recommended set up of these files.
variable_key: a data.frame containing all possible modeled variables, such as from the MOM6 model. Must contain columns Long.Name and Short.Name, containing the full names and abbreviated names of the variables. Abbreviated names should correspond to those in the variable importance plots
template: a character string designating the .qmd file to use as a template
report_path: character string designating where the reports should be saved

Function does not return anything. Reports are saved to report_path