Make Plots for Species Distribution Models — make_sdm

Produces plots necessary for SDM reports. Requires directory to be set up per directions in the package documentation/manual.

Usage

make_sdm_plots(
  species,
  type = c("ensemble", "weights", "importance", "residuals"),
  yr_min,
  yr_max,
  coastline,
  bathy,
  model_metrics
)

species: name of the species to plot. Must match folder name to pull correct data and save figures correctly.
type: at least one of the following: 'ensemble', 'weights', 'importance', 'residuals'. Used to determine what to plot.
yr_min, yr_max: start and end of timeseries to plot, used to pick correct model predictions
coastline: shapefile used to plot land in model prediction plots
bathy: raster file of bathymetry data, used to help mask off deeper predictions
model_metrics: a data.table containing the model metrics for each species. Generated by make_evaluation_csv.

Function does not return anything. Figures are saved to species-specific figures folder.